Agent-based models: Our goal is to facilitate the use of agent-based modeling as a general theoretical and methodological tool for analyzing behavior and more generally, investigating agents as realized in software or hardware (e.g., robots).
AVIDA: Digital evolution.
AVIDA-ED: Digital Evolution for Education.
Calendar generator CompuCell 3D: CompuCell is an open source software modeling environment and pde solver.
Detexify: Find the TeX code for drawn symbols.
Discrete Dynamics Lab: Tools for researching Cellular Automata, Random Boolean Networks, multi-value Discrete Dynamical Networks, and beyond
Eden: Eden is a script-based tool for easily managing runs of many small jobs on Nautilus without flooding the job queue.
FORTRAN: Useful documentation about FORTRAN.
FSTAT: FSTAT is a computer package for PCs which estimates and tests gene diversities and differentiation statistics from codominant genetic markers.
Gnuplot: Gnuplot is a portable command-line driven interactive data and function plotting utility for UNIX, IBM OS/2, MS Windows, DOS, Macintosh, VMS, Atari and many other platforms.
GPG: Encryption software.
Genepop: GENEPOP is a population genetics software package originally developed by Michel Raymond and Francois Rousset, at the Laboratiore de Genetique et Environment, Montpellier, France.
JANE: Journal/Author Name Estimator
Linux: Useful info about linux.
MathJax: Include equation in all browser.
Maxima: Maxima is a system for the manipulation of symbolic and numerical expressions, including differentiation, integration, Taylor series, Laplace transforms, ordinary differential equations, systems of linear equations, polynomials, and sets, lists, vectors, matrices, and tensors.
MIGRATE-N: Migrate estimates effective population sizes and past migration rates between n population assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes.
NetLogo: NetLogo is a cross-platform multi-agent programmable modeling environment.
Octave: GNU Octave is a high-level language, primarily intended for numerical computations.
Okular: Anotate pdf.
Populus: The Populus software contains a set of simulations that we use to teach population biology and evolutionary ecology at the University of Minnesota.
Prezi: The Zooming Presentation Editor
R Graph Gallery: A collection of graphics entirely generated with R.
R: R is a language and environment for statistical computing and graphics.
Sage: Open Source Mathematics Software: Sage is a free open source mathematics software system spanning a huge range of mathematics including algebra, calculus, combinatorics, number theory and graph theory.
SciLab: Scilab is a scientific software package for numerical computations providing a powerful open computing environment for engineering and scientific applications.
SciPy: SciPy (pronounced "Sigh Pie") is open-source software for mathematics, science, and engineering.
SDR Loop: Structurally Dissolvable Self-Reproducing Loop
and Evoloop: Evolving SDSR Loop
Structure: The program structure is a free software package for using multi-locus genotype data to investigate population structure.
Wordle: Wordle is a toy for generating "word clouds" from text that you provide.
Xournal: Anotate pdf.